diff --git a/TODO.md b/TODO.md
index 8aa2fb6..0407a78 100644
--- a/TODO.md
+++ b/TODO.md
@@ -153,29 +153,30 @@
 
 ## 🛣️ **IMPLEMENTATION ROADMAP**
 
-### **Phase 1: Core Functionality (Week 1)**
-1. `git_commit_prepare` - Essential git workflow
-2. `search_and_replace_batch` - Critical refactoring tool
-3. `http_request` - API testing capability
-4. `run_tests` - Development workflow essential
+### **Phase 1: Core Functionality ✅ COMPLETE**
+1. ✅ `git_commit_prepare` - Essential git workflow
+2. ✅ `search_and_replace_batch` - Critical refactoring tool
+3. ✅ `http_request` - API testing capability
+4. ✅ `run_tests` - Development workflow essential
+5. ✅ `dependency_check` - Security and maintenance
 
-### **Phase 2: Quality & Analysis (Week 2)**  
-5. `dependency_check` - Security and maintenance
-6. `analyze_codebase` - Code insights
-7. `lint_code` + `format_code` - Code quality
-8. `find_duplicates` - Code cleanup
+### **Phase 2: Quality & Analysis (Current Priority)**  
+6. `analyze_codebase` - Code insights and metrics
+7. `lint_code` - Code quality automation
+8. `format_code` - Code formatting automation
+9. `find_duplicates` - Code cleanup and deduplication
+10. `api_mock_server` - Advanced API testing server
 
-### **Phase 3: Enhanced UX (Week 3)**
-9. `environment_info` - System diagnostics
-10. `api_mock_server` - Advanced API testing
-11. `process_tree` - System monitoring
-12. Enhanced versions of existing tools
+### **Phase 3: Enhanced UX & Environment**
+11. `environment_info` - System diagnostics
+12. `process_tree` - System monitoring
+13. `manage_virtual_env` - Environment management
+14. Enhanced versions of existing tools (`execute_command_enhanced`, `search_code_enhanced`, `edit_block_enhanced`)
 
-### **Phase 4: Advanced Features (Week 4)**
-13. Documentation generation tools
-14. Project template system
-15. Virtual environment management
-16. Diff/patch operations
+### **Phase 4: Advanced Features**
+15. Documentation generation tools (`generate_documentation`)
+16. Project template system (`project_template`)
+17. Diff/patch operations (`generate_diff`, `apply_patch`, `create_patch_file`)
 
 ### **Phase 5: Specialized Tools (Future)**
 17. Process tracing and system call analysis
@@ -184,6 +185,63 @@
 
 ---
 
+## 🎯 **PHASE 2: QUALITY & ANALYSIS TOOLS** 
+
+### **Ready for Implementation (Priority Order)**
+
+#### **🔥 HIGH IMPACT - Code Quality Pipeline**
+```python
+❌ lint_code() - workflow_tools.py:274        (2-3 hours)
+❌ format_code() - workflow_tools.py:287      (2-3 hours)  
+```
+**Business Value**: Essential for CI/CD pipelines, code standards enforcement
+**Implementation**: Shell out to flake8, black, prettier, autopep8 with auto-detection
+**Safety**: 🟡 SAFE operations, no destructive changes
+
+#### **🔥 HIGH IMPACT - Code Insights**
+```python
+❌ analyze_codebase() - workflow_tools.py:35  (4-5 hours)
+❌ find_duplicates() - workflow_tools.py:142  (3-4 hours)
+```
+**Business Value**: Code quality metrics, technical debt identification
+**Implementation**: AST parsing, file analysis, similarity detection
+**Safety**: 🟡 SAFE operations, read-only analysis
+
+#### **🔥 MEDIUM IMPACT - API Testing Enhancement**
+```python
+❌ api_mock_server() - workflow_tools.py:204  (3-4 hours)
+```
+**Business Value**: Complete API testing ecosystem
+**Implementation**: FastAPI-based mock server with route configuration
+**Safety**: 🟡 SAFE operation, localhost only
+
+### **Phase 2 Success Criteria**
+- ✅ Complete code quality automation (lint + format)
+- ✅ Comprehensive codebase analysis capabilities
+- ✅ Duplicate code detection and cleanup guidance
+- ✅ Full API testing ecosystem (request + mock server)
+- ✅ 5 additional tools implemented (10/19 total complete)
+
+### **Phase 2 Implementation Plan**
+
+#### **Week 1: Code Quality Pipeline**
+1. **Day 1-2**: Implement `lint_code()` with multi-linter support
+2. **Day 3-4**: Implement `format_code()` with auto-detection
+3. **Day 5**: Test integration and edge cases
+
+#### **Week 2: Analysis & API Tools**
+1. **Day 1-3**: Implement `analyze_codebase()` with comprehensive metrics
+2. **Day 4-5**: Implement `find_duplicates()` with similarity algorithms
+3. **Day 6**: Implement `api_mock_server()` with FastAPI
+
+#### **Technical Requirements for Phase 2**
+- **Dependencies**: flake8, black, prettier, fastapi, uvicorn
+- **Cross-platform**: Windows/Linux/macOS support
+- **Error handling**: Graceful fallbacks for missing tools
+- **Safety**: All SACRED TRUST standards maintained
+
+---
+
 ## 🔧 **IMPLEMENTATION GUIDELINES**
 
 ### **Safety First** 🛡️
@@ -209,17 +267,29 @@
 
 ---
 
-## 🎯 **QUICK START IMPLEMENTATION**
+## 🎯 **QUICK START: PHASE 2 IMPLEMENTATION**
 
-To implement the highest-impact tools first:
+**Phase 1 Complete!** ✅ 5/19 tools implemented (26% progress)
+
+### **Next Priority: Phase 2 Quality & Analysis Tools**
 
 ```bash
-# Focus on these files in order:
-1. enhanced_mcp/git_integration.py - git_commit_prepare()
-2. enhanced_mcp/workflow_tools.py - search_and_replace_batch()
-3. enhanced_mcp/workflow_tools.py - http_request()
-4. enhanced_mcp/workflow_tools.py - run_tests()
-5. enhanced_mcp/workflow_tools.py - dependency_check()
+# Phase 2 implementation order (highest impact first):
+1. enhanced_mcp/workflow_tools.py - lint_code()           # 2-3 hours
+2. enhanced_mcp/workflow_tools.py - format_code()        # 2-3 hours  
+3. enhanced_mcp/workflow_tools.py - analyze_codebase()   # 4-5 hours
+4. enhanced_mcp/workflow_tools.py - find_duplicates()    # 3-4 hours
+5. enhanced_mcp/workflow_tools.py - api_mock_server()    # 3-4 hours
+```
+
+### **Phase 1 Achievements** ✅
+```bash
+# Already implemented and fully functional:
+✅ enhanced_mcp/git_integration.py - git_commit_prepare()
+✅ enhanced_mcp/workflow_tools.py - search_and_replace_batch()
+✅ enhanced_mcp/workflow_tools.py - http_request()
+✅ enhanced_mcp/workflow_tools.py - run_tests()
+✅ enhanced_mcp/workflow_tools.py - dependency_check()
 ```
 
 Each implementation should: