Hole spacing also from through-hole pads and fixed vias

A route could drop a via next to (or onto) a through-hole pad of its own
net, where it changes layer for free, and a via reusing a fixed via's
cell came out a little off the fixed via's centre, beside it. No via now
goes within hole spacing of a through-hole pad of any net; a via in a pad
is checked exactly against every via and hole; and a routed via on a
fixed via of its net is not written. charge-sense: 4 hole_to_hole to 0;
flight controller: 2 to 0, unconnected unchanged.

src/freeroute/route/grid_router.py

@@ -257,6 +257,7 @@ class GridRouter:
         # an own-net via at the very same cell, which it simply reuses.
         drill = via_drill if via_drill else 2 * self.via_half
         need = drill + max(hole_to_hole, 0)
+        self._via_drill, self._hole_gap, self._hole_need = drill, max(hole_to_hole, 0), need
         reach = math.ceil(need / self.step)
         self._hole_offsets = [
             (dx, dy)
@@ -265,6 +266,7 @@ class GridRouter:
             if (dx or dy) and math.hypot(dx, dy) * self.step < need
         ]
         self._via_nets: dict[Cell, dict[int, int]] = {}  # routed via centres
+        self._via_centres: list[IntPoint] | None = None  # cache for _hole_clear_at
         self._fixed_vias: dict[Cell, int] = {}
         self._fixed_via_points: set[tuple[int, IntPoint]] = set()
 
@@ -299,6 +301,21 @@ class GridRouter:
             if isinstance(item, Via) and item.fixed and item.net_nos:
                 self._fixed_vias[self._cell_of(item.location)] = item.net_nos[0]
                 self._fixed_via_points.add((item.net_nos[0], item.location))
+        # Through-hole pads have holes too, and a route changes layer at one
+        # for free, so no via (of any net) goes within hole spacing of one.
+        # The DSN has no drill for a pad; its smaller half size stands in.
+        self._tht_holes: list[tuple[IntPoint, int]] = []
+        self._tht_block: set[Cell] = set()
+        for pin in board.get_pins():
+            if pin.shape is None or sum(1 for layer in pin.layers if layer in self.layers) < 2:
+                continue
+            box = pin.shape.bounding_box()
+            radius = min(box.ur.x - box.ll.x, box.ur.y - box.ll.y) // 2
+            reach = radius + self._via_drill // 2 + self._hole_gap
+            self._tht_holes.append((pin.location, reach))
+            ring = IntBox(pin.location.x, pin.location.y, pin.location.x, pin.location.y)
+            for cell in self._cells_in_box(ring, reach):
+                self._tht_block.add(cell)
 
     # --- grid helpers -------------------------------------------------------
 
@@ -524,7 +541,10 @@ class GridRouter:
         return nets
 
     def _holes_clear(self, cell: Cell, net_no: int) -> bool:
-        """No via centre within hole-to-hole reach, but an own-net one here."""
+        """No via centre within hole-to-hole reach, but an own-net one here,
+        and no through-hole pad's hole within reach at all."""
+        if cell in self._tht_block:
+            return False
         if self._via_nets_at(cell) - {net_no}:
             return False
         cx, cy = cell
@@ -717,7 +737,23 @@ class GridRouter:
             ]
             copper += [(box, net) for net, _, box in self.board.get_fixed_copper()]
             self._static_copper = copper
-        return not any(net != net_no and box.overlaps(grown) for box, net in self._static_copper)
+        if any(net != net_no and box.overlaps(grown) for box, net in self._static_copper):
+            return False
+        return self._hole_clear_at(point)
+
+    def _hole_clear_at(self, point: IntPoint) -> bool:
+        """Hole spacing measured exactly from ``point`` to every via and
+        through-hole pad (a via moved into a pad is not on its cell's centre)."""
+        need = self._hole_need
+        if self._via_centres is None:  # rebuilt only after vias change
+            self._via_centres = [loc for _net, loc in self._fixed_via_points] + [
+                self._cell_center(c) for c, count in self._via_nets.items() if any(count.values())
+            ]
+        if any(math.hypot(c.x - point.x, c.y - point.y) < need for c in self._via_centres):
+            return False
+        return not any(
+            math.hypot(loc.x - point.x, loc.y - point.y) < reach for loc, reach in self._tht_holes
+        )
 
     def _stub_cells(self, pin_location: IntPoint, cell: Cell, half: int | None = None) -> list[Cell]:
         """Cells where another net's trace would come too close to the stub."""
@@ -993,6 +1029,8 @@ class GridRouter:
         for cell in conn.via_cells:
             count = self._via_nets.setdefault(cell, {})
             count[conn.net_no] = count.get(conn.net_no, 0) + 1
+        if conn.via_cells:
+            self._via_centres = None
         for cell, layer in conn.trace_cells:
             self._cell_owner[(*cell, layer)] = conn.index
         conn.half = half = self._conn_half(conn)
@@ -1071,6 +1109,8 @@ class GridRouter:
             count = self._via_nets.get(cell)
             if count and count.get(conn.net_no):
                 count[conn.net_no] -= 1
+        if conn.via_cells:
+            self._via_centres = None
         conn.via_cells = []
         conn.wires = []
         conn.vias = []